Seminar in Ecology

BIO605

Course information

BIO605 SEMINAR IN ECOLOGY

  • Instructor: Akira Terui
  • When: Thurs 12:30 – 14:45
  • Where: Sullivan 349
  • Virtual office hour: By appointment
  • Required equipment: Laptop installed with R

What we will learn

What is Ecology?

  • Term means “the study of the household”
  • Ecologists study the interactions between organisms and their environment

What are the components of an organism’s environment?

  • Physical conditions
  • Chemical conditions
  • Other organisms, both the same and different species

Topics

Population Ecology

  • Population growth
  • Density dependence
  • Metapopulations

Community Ecology

  • Competition
  • Metacommunities

Theory & Observation

We learn theory, then expand

What is the role of theory in ecology?

Theory

Observation

Theory has up- & downsides

Advantage

  • Ultimate mode of experiment
  • focus on a specific mechanism(s)
  • exclude confounding influences

Disadvantage

  • There are always assumptions
  • These assumptions often oversimplify the nature (mathematical constraints)
    • e.g., no immigration from other places etc.

Observation has up- & downsides

Advantage

  • It’s real
  • Reflect the full complexity of the nature

Disadvantage

  • Multiple mechanisms can produce the same pattern
  • Statistical approaches cannot separate these mechanisms, for example
    • Species A does not co-occur with species B…
    • Is this a result of competition or different environmental requirements?

Mismatch

Mismatch b/w theory & observation is common

  • Theory often fail to explain observed patterns
  • Motivate ecologists to develop new/novel concepts!

Course Structure

Part 1: Basic R exercise (Week 1 & 2)

  • The first two weeks will be devoted to learning R

Part 2: Lecture & Paper discussion (Week 3 to 12)

  • One lecture for each topic with R exercise
  • Student-led paper discussion

Part 3: Synthesis (Week 13 & 14)

  • Final report - synthesis questions

Grading

Attendance - Attendance - 10% - R script submission (lectures) - 30%

Paper Introduction

  • Presentation evaluation - 15%
  • Discussion participation (paper discussions) - 15%

Synthesis Paper/Presentation

  • Synthesis report/presentation - 30%

Detailed guidelines will be provided!